`guido.helpers`

Module Contents

`rev_comp`(seq[, rna])
`is_tool`(name)	Check whether name is on PATH and marked as executable.
`load_cfd_scoring_matrix`()	Load the cfd scoring matrix.
`_guide_instance_to_dict`(guide)	Convert a class instance to a dictionary.
`_guides_to_dataframe`(guides)	Convert a list of guides to a pandas dataframe.
`_guides_to_csv`(guides, file)	Write a list of guides to a csv file.
`_guides_to_bed`(guides, file)	Write a list of guides to a bed file.
`_guides_detailed_table`(guides, file)	Write a detailed list of guides to a text file.

guido.helpers.EXCLUDED_ATTRS = ['locus_seq', 'guide_long_seq', 'relative_cut_pos', 'mmej_patterns', 'off_targets', '_layers'][source]

guido.helpers.is_tool(name)[source]: Check whether name is on PATH and marked as executable.

guido.helpers.load_cfd_scoring_matrix()[source]: Load the cfd scoring matrix.

guido.helpers._guide_instance_to_dict(guide)[source]: Convert a class instance to a dictionary.

guido.helpers._guides_to_dataframe(guides)[source]: Convert a list of guides to a pandas dataframe.

guido.helpers._guides_to_csv(guides, file)[source]: Write a list of guides to a csv file.

guido.helpers._guides_to_bed(guides, file)[source]: Write a list of guides to a bed file.

guido.helpers._guides_detailed_table(guides, file)[source]: Write a detailed list of guides to a text file.