Installation

Install guido and azimuth (dependency) via PyPi using pip:

$ pip install guido
$ pip install git+https://github.com/Biomatters/Azimuth

Please note that guido requires bowtie to be installed on your system. Please follow the instructions on the bowtie website to install it.

Additionaly, guido requires tabix to be installed in order to search for off-targets. Please follow the instructions on the htslib website to install it.

Alternatively, you can install both bowtie and tabix by using conda:

$ conda install -c bioconda bowtie
$ conda install -c bioconda tabix